3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09821

Details:

PFam ID : PF09821

PFam Domain Description : ABC nitrate/sulfonate/bicarbonate family transporter, ATPase subunit

Number of Sequence in 50% Dataset : 29

Number of Sequence in Full Dataset : 141

Average sequence length: 116.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09821	B0VJU8_CLOAI_9_136	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09821	E6N9C3_9ARCH_34_155	100

Sequence based PCA Plot of the family - PF09821 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=21 Length=8
Motif2 Start=31 Length=8
Motif3 Start=12 Length=8
Motif4 Start=105 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay