3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09815

Details:

PFam ID : PF09815

PFam Domain Description : XK-related protein

Number of Sequence in 50% Dataset : 124

Number of Sequence in Full Dataset : 239

Average sequence length: 249.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09815	E2RDV6_CANFA_77_175	92.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09815	Q4RP40_TETNG_37_383	100

Sequence based PCA Plot of the family - PF09815 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=130 Length=8
Motif3 Start=249 Length=8
Motif4 Start=331 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay