3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09812

Details:

PFam ID : PF09812

PFam Domain Description : Mitochondrial ribosomal protein L28

Number of Sequence in 50% Dataset : 27

Number of Sequence in Full Dataset : 98

Average sequence length: 130.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09812	Q6CBQ7_YARLI_71_222	69.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09812	A8P9A5_BRUMA_31_192	100

Sequence based PCA Plot of the family - PF09812 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=116 Length=8
Motif3 Start=148 Length=8
Motif4 Start=138 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay