3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09807

Details:

PFam ID : PF09807

PFam Domain Description : Uncharacterized conserved protein (DUF2348)

Number of Sequence in 50% Dataset : 43

Number of Sequence in Full Dataset : 76

Average sequence length: 211.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09807	B0DKU4_LACBS_2_237	83.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09807	A9TYB6_PHYPA_1_254	100

Sequence based PCA Plot of the family - PF09807 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=215 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay