3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09805

Details:

PFam ID : PF09805

PFam Domain Description : Nucleolar protein 12 (25kDa)

Number of Sequence in 50% Dataset : 56

Number of Sequence in Full Dataset : 161

Average sequence length: 140.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09805	A7YXP0_PERCH_11_216	89.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09805	E9C3X0_9EUKA_41_271	98.7

Sequence based PCA Plot of the family - PF09805 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=8
Motif2 Start=20 Length=27

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay