3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09804

Details:

PFam ID : PF09804

PFam Domain Description : Uncharacterized conserved protein (DUF2347)

Number of Sequence in 50% Dataset : 54

Number of Sequence in Full Dataset : 83

Average sequence length: 357.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09804	E7R2E6_PICAD_19_577	71.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09804	E2LRW9_MONPE_12_175	100

Sequence based PCA Plot of the family - PF09804 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=415 Length=8
Motif2 Start=521 Length=8
Motif3 Start=34 Length=11
Motif4 Start=428 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay