3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09801

Details:

PFam ID : PF09801

PFam Domain Description : Integral membrane protein S linking to the trans Golgi network

Number of Sequence in 50% Dataset : 42

Number of Sequence in Full Dataset : 136

Average sequence length: 129.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09801	A7SG14_NEMVE_6_147	80.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09801	Q5DEJ3_SCHJA_5_149	100

Sequence based PCA Plot of the family - PF09801 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=150 Length=11
Motif2 Start=1 Length=18
Motif3 Start=105 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay