3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09796

Details:

PFam ID : PF09796

PFam Domain Description : Ubiquinol-cytochrome-c reductase complex subunit (QCR10)

Number of Sequence in 50% Dataset : 7

Number of Sequence in Full Dataset : 54

Average sequence length: 62.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09796	A1DGY2_NEOFI_1_56	50

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09796	E3L560_PUCGT_73_136	100

Sequence based PCA Plot of the family - PF09796 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=11
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=48 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay