3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09794

Details:

PFam ID : PF09794

PFam Domain Description : Transport protein Avl9

Number of Sequence in 50% Dataset : 68

Number of Sequence in Full Dataset : 124

Average sequence length: 278.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09794	B0ERT7_ENTDI_72_328	62.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09794	F1L280_ASCSU_4_173	100

Sequence based PCA Plot of the family - PF09794 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=37 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=28 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay