3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09793

Details:

PFam ID : PF09793

PFam Domain Description : Anticodon-binding domain

Number of Sequence in 50% Dataset : 42

Number of Sequence in Full Dataset : 121

Average sequence length: 89.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09793	B7FPR6_PHATC_105_202	92.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09793	B7FPR6_PHATC_105_202	100

Sequence based PCA Plot of the family - PF09793 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=90 Length=8
Motif3 Start=33 Length=8
Motif4 Start=62 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay