3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09792

Details:

PFam ID : PF09792

PFam Domain Description : Ubiquitin 3 binding protein But2 C-terminal domain

Number of Sequence in 50% Dataset : 22

Number of Sequence in Full Dataset : 58

Average sequence length: 141.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09792	A6S760_BOTFB_35_192	28.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09792	A7EJG4_SCLS1_200_350	98.2

Sequence based PCA Plot of the family - PF09792 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=21 Length=8
Motif2 Start=12 Length=8
Motif3 Start=3 Length=8
Motif4 Start=61 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay