3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09790

Details:

PFam ID : PF09790

PFam Domain Description : Hyccin

Number of Sequence in 50% Dataset : 28

Number of Sequence in Full Dataset : 66

Average sequence length: 252.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09790	Q5DGS5_SCHJA_16_179	70.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09790	E9CBL2_9EUKA_175_506	96.9

Sequence based PCA Plot of the family - PF09790 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=40 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay