3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09786

Details:

PFam ID : PF09786

PFam Domain Description : Cytochrome B561, N terminal

Number of Sequence in 50% Dataset : 38

Number of Sequence in Full Dataset : 73

Average sequence length: 372.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09786	D2VXB5_NAEGR_191_558	67.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09786	B4QNG5_DROSI_7_94	97.2

Sequence based PCA Plot of the family - PF09786 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=487 Length=8
Motif4 Start=474 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay