3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09784

Details:

PFam ID : PF09784

PFam Domain Description : Mitochondrial ribosomal protein L31

Number of Sequence in 50% Dataset : 4

Number of Sequence in Full Dataset : 51

Average sequence length: 103

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09784	C1E8U2_MICSR_14_78	33.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09784	Q6CNJ0_KLULA_8_129	100

Sequence based PCA Plot of the family - PF09784 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=33 Length=8
Motif2 Start=24 Length=8
Motif3 Start=15 Length=8
Motif4 Start=5 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay