3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09783

Details:

PFam ID : PF09783

PFam Domain Description : Vacuolar import and degradation protein

Number of Sequence in 50% Dataset : 28

Number of Sequence in Full Dataset : 118

Average sequence length: 162.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09783	E2LZJ9_MONPE_184_252	85.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09783	E9CIR9_9EUKA_78_288	100

Sequence based PCA Plot of the family - PF09783 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=20 Length=8
Motif2 Start=2 Length=8
Motif3 Start=110 Length=8
Motif4 Start=168 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay