3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09781

Details:

PFam ID : PF09781

PFam Domain Description : NADH:ubiquinone oxidoreductase, NDUFB5/SGDH subunit

Number of Sequence in 50% Dataset : 8

Number of Sequence in Full Dataset : 53

Average sequence length: 170.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09781	C1BVV3_9MAXI_11_195	85.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09781	Q5C2C0_SCHJA_17_192	100

Sequence based PCA Plot of the family - PF09781 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=71 Length=8
Motif2 Start=14 Length=30

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay