3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09779

Details:

PFam ID : PF09779

PFam Domain Description : Uncharacterized conserved protein (DUF2349)

Number of Sequence in 50% Dataset : 28

Number of Sequence in Full Dataset : 82

Average sequence length: 116.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09779	B8P5B6_POSPM_2_87	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09779	Q54D69_DICDI_54_209	100

Sequence based PCA Plot of the family - PF09779 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=18
Motif2 Start=1 Length=8
Motif3 Start=53 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay