3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09778

Details:

PFam ID : PF09778

PFam Domain Description : Guanylylate cyclase

Number of Sequence in 50% Dataset : 34

Number of Sequence in Full Dataset : 63

Average sequence length: 163.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09778	A7RM91_NEMVE_6_221	75.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09778	A7RM91_NEMVE_6_221	98.3

Sequence based PCA Plot of the family - PF09778 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=69 Length=8
Motif2 Start=208 Length=8
Motif3 Start=166 Length=8
Motif4 Start=10 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay