3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09777

Details:

PFam ID : PF09777

PFam Domain Description : Osteopetrosis-associated transmembrane protein 1 precursor

Number of Sequence in 50% Dataset : 29

Number of Sequence in Full Dataset : 53

Average sequence length: 198.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09777	A8P2D7_BRUMA_1_72	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09777	B3RWD3_TRIAD_64_319	100

Sequence based PCA Plot of the family - PF09777 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=28
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay