3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09774

Details:

PFam ID : PF09774

PFam Domain Description : Caffeine-induced death protein 2

Number of Sequence in 50% Dataset : 31

Number of Sequence in Full Dataset : 96

Average sequence length: 138.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09774	CID2_SCHPO_9_162	56.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09774	A7TMA1_VANPO_38_203	100

Sequence based PCA Plot of the family - PF09774 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=32 Length=8
Motif2 Start=23 Length=8
Motif3 Start=1 Length=8
Motif4 Start=14 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay