3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09773

Details:

PFam ID : PF09773

PFam Domain Description : Meckelin (Transmembrane protein 67)

Number of Sequence in 50% Dataset : 76

Number of Sequence in Full Dataset : 95

Average sequence length: 476.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09773	Q4RC16_TETNG_1_82	84

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09773	E5SMJ6_TRISP_130_661	100

Sequence based PCA Plot of the family - PF09773 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=855 Length=8
Motif2 Start=628 Length=8
Motif3 Start=84 Length=8
Motif4 Start=490 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay