3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09772

Details:

PFam ID : PF09772

PFam Domain Description : Transmembrane protein 26

Number of Sequence in 50% Dataset : 32

Number of Sequence in Full Dataset : 54

Average sequence length: 221.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09772	E4YRC0_OIKDI_2_147	80.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09772	C3ZQY0_BRAFL_89_396	100

Sequence based PCA Plot of the family - PF09772 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=93 Length=8
Motif3 Start=67 Length=8
Motif4 Start=20 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay