3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09771

Details:

PFam ID : PF09771

PFam Domain Description : Transmembrane protein 188

Number of Sequence in 50% Dataset : 11

Number of Sequence in Full Dataset : 40

Average sequence length: 110.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09771	D3DMY4_DROME_1_54	70

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09771	A8WW24_CAEBR_8_138	100

Sequence based PCA Plot of the family - PF09771 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=8
Motif2 Start=17 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay