3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09763

Details:

PFam ID : PF09763

PFam Domain Description : Exocyst complex component Sec3

Number of Sequence in 50% Dataset : 92

Number of Sequence in Full Dataset : 157

Average sequence length: 495.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09763	B9GP11_POPTR_3_161	51.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09763	D8TML2_VOLCA_282_588	100

Sequence based PCA Plot of the family - PF09763 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=686 Length=8
Motif4 Start=366 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay