3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09756

Details:

PFam ID : PF09756

PFam Domain Description : DDRGK domain

Number of Sequence in 50% Dataset : 30

Number of Sequence in Full Dataset : 87

Average sequence length: 159.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09756	B7FY45_PHATC_494_673	17.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09756	F0VR45_NEOCA_45_241	100

Sequence based PCA Plot of the family - PF09756 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay