3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09753

Details:

PFam ID : PF09753

PFam Domain Description : Membrane fusion protein Use1

Number of Sequence in 50% Dataset : 82

Number of Sequence in Full Dataset : 146

Average sequence length: 219.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09753	B7G1W4_PHATC_13_253	61.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09753	Q1LVG3_DANRE_1_102	100

Sequence based PCA Plot of the family - PF09753 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay