3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09752

Details:

PFam ID : PF09752

PFam Domain Description : Uncharacterized conserved protein (DUF2048)

Number of Sequence in 50% Dataset : 47

Number of Sequence in Full Dataset : 92

Average sequence length: 277.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09752	B7Q0M7_IXOSC_17_93	73.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09752	Q84FB1_MYXXA_231_321	100

Sequence based PCA Plot of the family - PF09752 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=81 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay