3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09751

Details:

PFam ID : PF09751

PFam Domain Description : Nuclear protein Es2

Number of Sequence in 50% Dataset : 78

Number of Sequence in Full Dataset : 167

Average sequence length: 319.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09751	C5LXJ9_9ALVE_4_247	76.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09751	B9IAQ5_POPTR_274_411	100

Sequence based PCA Plot of the family - PF09751 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=11
Motif2 Start=19 Length=8
Motif3 Start=146 Length=8
Motif4 Start=455 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay