3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09750

Details:

PFam ID : PF09750

PFam Domain Description : Alternative splicing regulator

Number of Sequence in 50% Dataset : 31

Number of Sequence in Full Dataset : 98

Average sequence length: 122.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09750	B4PXK6_DROYA_59_104	90

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09750	D0NJ59_PHYIT_18_152	100

Sequence based PCA Plot of the family - PF09750 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=18
Motif2 Start=39 Length=8
Motif3 Start=86 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay