3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09749

Details:

PFam ID : PF09749

PFam Domain Description : Uncharacterised conserved protein

Number of Sequence in 50% Dataset : 75

Number of Sequence in Full Dataset : 136

Average sequence length: 213.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09749	A2EEB5_TRIVA_2_177	98.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09749	F0XCG7_9PEZI_40_311	100

Sequence based PCA Plot of the family - PF09749 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=33 Length=8
Motif4 Start=78 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay