3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09746

Details:

PFam ID : PF09746

PFam Domain Description : Tumour-associated protein

Number of Sequence in 50% Dataset : 33

Number of Sequence in Full Dataset : 74

Average sequence length: 205.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09746	A7T8A8_NEMVE_1_162	12.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09746	E2ASD0_9HYME_519_599	100

Sequence based PCA Plot of the family - PF09746 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=64 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay