3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09745

Details:

PFam ID : PF09745

PFam Domain Description : Coiled-coil domain-containing protein 55 (DUF2040)

Number of Sequence in 50% Dataset : 33

Number of Sequence in Full Dataset : 130

Average sequence length: 119.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09745	A8IW32_CHLRE_55_126	25

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09745	B7FZ69_PHATC_64_201	100

Sequence based PCA Plot of the family - PF09745 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=77 Length=8
Motif3 Start=100 Length=8
Motif4 Start=23 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay