3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09744

Details:

PFam ID : PF09744

PFam Domain Description : JNK_SAPK-associated protein-1

Number of Sequence in 50% Dataset : 24

Number of Sequence in Full Dataset : 68

Average sequence length: 139.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09744	F1N9R3_CHICK_1_51	39.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09744	E9HIJ6_DAPPU_30_188	100

Sequence based PCA Plot of the family - PF09744 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=32 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay