3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09743

Details:

PFam ID : PF09743

PFam Domain Description : Uncharacterized conserved protein (DUF2042)

Number of Sequence in 50% Dataset : 40

Number of Sequence in Full Dataset : 77

Average sequence length: 242.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09743	A9URP4_MONBE_49_179	76.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09743	C1MI94_MICPC_3_303	100

Sequence based PCA Plot of the family - PF09743 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=48 Length=8
Motif4 Start=276 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay