3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09741

Details:

PFam ID : PF09741

PFam Domain Description : Uncharacterized conserved protein (DUF2045)

Number of Sequence in 50% Dataset : 20

Number of Sequence in Full Dataset : 43

Average sequence length: 186

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09741	A9V4S7_MONBE_1_160	73.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09741	B3RJB8_TRIAD_79_332	100

Sequence based PCA Plot of the family - PF09741 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=242 Length=8
Motif3 Start=149 Length=11
Motif4 Start=28 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay