3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09738

Details:

PFam ID : PF09738

PFam Domain Description : Double stranded RNA binding protein (DUF2051)

Number of Sequence in 50% Dataset : 22

Number of Sequence in Full Dataset : 97

Average sequence length: 204.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09738	Q4V8Z2_DANRE_260_451	14.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09738	E5SZH6_TRISP_5_275	98.9

Sequence based PCA Plot of the family - PF09738 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=120 Length=8
Motif2 Start=98 Length=8
Motif3 Start=108 Length=8
Motif4 Start=19 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay