3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09735

Details:

PFam ID : PF09735

PFam Domain Description : Membrane-associated apoptosis protein

Number of Sequence in 50% Dataset : 63

Number of Sequence in Full Dataset : 92

Average sequence length: 538.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09735	E5S448_TRISP_152_267	53.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09735	B3RL29_TRIAD_1_136	100

Sequence based PCA Plot of the family - PF09735 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=665 Length=8
Motif3 Start=705 Length=8
Motif4 Start=1031 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay