3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09733

Details:

PFam ID : PF09733

PFam Domain Description : VEFS-Box of polycomb protein

Number of Sequence in 50% Dataset : 34

Number of Sequence in Full Dataset : 90

Average sequence length: 117.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09733	A8JBL8_CHLRE_1192_1272	90.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09733	F0XTF5_9PEZI_635_732	100

Sequence based PCA Plot of the family - PF09733 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=11
Motif2 Start=1 Length=8
Motif3 Start=76 Length=8
Motif4 Start=25 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay