3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09732

Details:

PFam ID : PF09732

PFam Domain Description : Cactus-binding C-terminus of cactin protein

Number of Sequence in 50% Dataset : 9

Number of Sequence in Full Dataset : 90

Average sequence length: 118.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09732	E7D1F2_9ARAC_266_335	50

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09732	A2D746_TRIVA_287_422	100

Sequence based PCA Plot of the family - PF09732 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=91 Length=17
Motif2 Start=125 Length=11
Motif3 Start=30 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay