3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09731

Details:

PFam ID : PF09731

PFam Domain Description : Mitochondrial inner membrane protein

Number of Sequence in 50% Dataset : 117

Number of Sequence in Full Dataset : 219

Average sequence length: 408.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09731	O65656_ARATH_572_688	47.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09731	O65656_ARATH_355_556	92.2

Sequence based PCA Plot of the family - PF09731 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=70 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay