3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09730

Details:

PFam ID : PF09730

PFam Domain Description : Microtubule-associated protein Bicaudal-D

Number of Sequence in 50% Dataset : 34

Number of Sequence in Full Dataset : 63

Average sequence length: 394.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09730	C1BRD7_9MAXI_75_139	3.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09730	E5SKL7_TRISP_383_753	96.7

Sequence based PCA Plot of the family - PF09730 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=18 Length=8
Motif2 Start=245 Length=8
Motif3 Start=99 Length=8
Motif4 Start=236 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay