3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09729

Details:

PFam ID : PF09729

PFam Domain Description : Gti1/Pac2 family

Number of Sequence in 50% Dataset : 45

Number of Sequence in Full Dataset : 152

Average sequence length: 129.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09729	B0DSM6_LACBS_332_387	72.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09729	GTI1_SCHPO_10_306	100

Sequence based PCA Plot of the family - PF09729 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=29 Length=8
Motif3 Start=171 Length=8
Motif4 Start=43 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay