3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09728

Details:

PFam ID : PF09728

PFam Domain Description : Myosin-like coiled-coil protein

Number of Sequence in 50% Dataset : 50

Number of Sequence in Full Dataset : 125

Average sequence length: 244.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09728	A8N2Z4_COPC7_111_226	55.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09728	D8U4X6_VOLCA_244_579	100

Sequence based PCA Plot of the family - PF09728 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=145 Length=8
Motif3 Start=75 Length=8
Motif4 Start=326 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay