3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09726

Details:

PFam ID : PF09726

PFam Domain Description : Transmembrane protein

Number of Sequence in 50% Dataset : 41

Number of Sequence in Full Dataset : 85

Average sequence length: 379.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09726	E1FGR8_LOALO_5_162	50

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09726	E5SME9_TRISP_10_616	100

Sequence based PCA Plot of the family - PF09726 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=18
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay