3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09725

Details:

PFam ID : PF09725

PFam Domain Description : Folate-sensitive fragile site protein Fra10Ac1

Number of Sequence in 50% Dataset : 18

Number of Sequence in Full Dataset : 88

Average sequence length: 112.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09725	B8CDD6_THAPS_64_300	5.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09725	E9BX11_9EUKA_1_178	100

Sequence based PCA Plot of the family - PF09725 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=81 Length=8
Motif4 Start=206 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay