3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09724

Details:

PFam ID : PF09724

PFam Domain Description : Uncharacterized conserved protein (DUF2036)

Number of Sequence in 50% Dataset : 96

Number of Sequence in Full Dataset : 163

Average sequence length: 277.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09724	Q9LIW8_ORYSA_48_174	67.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09724	B7GAX2_PHATC_277_503	100

Sequence based PCA Plot of the family - PF09724 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=20 Length=8
Motif2 Start=11 Length=8
Motif3 Start=48 Length=8
Motif4 Start=2 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay