3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09723

Details:

PFam ID : PF09723

PFam Domain Description : Zinc ribbon domain

Number of Sequence in 50% Dataset : 16

Number of Sequence in Full Dataset : 680

Average sequence length: 41.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09723	E1MJ29_9GAMM_19_336	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09723	C0GHF6_9FIRM_1_42	100

Sequence based PCA Plot of the family - PF09723 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=17
Motif2 Start=30 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay