3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09721

Details:

PFam ID : PF09721

PFam Domain Description : Transmembrane exosortase (Exosortase_EpsH)

Number of Sequence in 50% Dataset : 197

Number of Sequence in Full Dataset : 352

Average sequence length: 236.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09721	E1MJ29_9GAMM_19_336	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09721	C7DGM1_9EURY_9_282	99.7

Sequence based PCA Plot of the family - PF09721 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=33 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay