3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09709

Details:

PFam ID : PF09709

PFam Domain Description : CRISPR-associated protein (Cas_Csd1)

Number of Sequence in 50% Dataset : 99

Number of Sequence in Full Dataset : 191

Average sequence length: 550.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09709	C1PBM5_BACCO_14_306	92.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09709	Q1J1U4_DEIGD_4_623	100

Sequence based PCA Plot of the family - PF09709 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=15 Length=8
Motif2 Start=119 Length=8
Motif3 Start=4 Length=8
Motif4 Start=59 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay