3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09707

Details:

PFam ID : PF09707

PFam Domain Description : CRISPR-associated protein (Cas_Cas2CT1978)

Number of Sequence in 50% Dataset : 10

Number of Sequence in Full Dataset : 149

Average sequence length: 82.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09707	D3D4A1_9ACTO_20_75	33.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09707	D3D4A1_9ACTO_20_75	99.3

Sequence based PCA Plot of the family - PF09707 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=8
Motif2 Start=28 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay